If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ), 'gf_id' => 'HOM05D000773', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000773' ), 'data_identifier' => 'HOM05D000773', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000773', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '761', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34240' => 'bna', 'A05p06000' => 'bna', 'A06p43130' => 'bna', 'A07p12980' => 'bna', 'A08p27390' => 'bna', 'A08p32220' => 'bna', 'A09p27760' => 'bna', 'A09p39970' => 'bna', 'A09p62640' => 'bna', 'Aa31LG1G1120' => 'aar', 'Aa31LG1G21220' => 'aar', 'Aa31LG1G27440' => 'aar', 'Aa31LG2G7140' => 'aar', 'Aa31LG7G8510' => 'aar', 'Aa31LG9G10840' => 'aar', 'Actinidia02834' => 'ach', 'Actinidia04841' => 'ach', 'Actinidia14576' => 'ach', 'Actinidia16067' => 'ach', 'Actinidia17579' => 'ach', 'Actinidia18414' => 'ach', 'Actinidia24966' => 'ach', 'Actinidia24967' => 'ach', 'Actinidia26247' => 'ach', 'Actinidia26550' => 'ach', 'Actinidia26551' => 'ach', 'Actinidia28638' => 'ach', 'Actinidia35025' => 'ach', 'Actinidia36925' => 'ach', 'Actinidia37293' => 'ach', 'Actinidia38833' => 'ach', 'Ah.05g175340' => 'amhyb', 'Ah.05g180450' => 'amhyb', 'Ah.08g220500' => 'amhyb', 'Ah.12g051760' => 'amhyb', 'Ah.12g055320' => 'amhyb', 'Ah.15g099680' => 'amhyb', 'AL1G25710' => 'aly', 'AL1G39150' => 'aly', 'AL4G45260' => 'aly', 'AL5G13230' => 'aly', 'AL6G45830' => 'aly', 'Aqoxy1G00703' => 'aox', 'Aqoxy3G00444' => 'aox', 'Aqoxy7G00265' => 'aox', 'Aqoxy7G01946' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8B3E5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG8GG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYNY5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CTKS8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2H3M1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7132P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGA34W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H31DAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3C0MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NR9KRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIUN11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4B6Y9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BBB1' => 'arhy', 'AT1G13880' => 'ath', 'AT1G26580' => 'ath', 'AT2G03470' => 'ath', 'AT2G46040' => 'ath', 'AT4G11400' => 'ath', 'ATR0064G074' => 'atr', 'ATR0618G006' => 'atr', 'ATR0680G269' => 'atr', 'ATR0680G408' => 'atr', 'Atru.chr11.1664' => 'acertr', 'Atru.chr5.1099' => 'acertr', 'Atru.chr5.518' => 'acertr', 'Atru.chr5.519' => 'acertr', 'Atru.chr8.2200' => 'acertr', 'Atru.chr8.409' => 'acertr', 'Atru.chr8.557' => 'acertr', 'Atru.chr9.2159' => 'acertr', 'Atru.chr9.384' => 'acertr', 'AUR62001691' => 'cqu', 'AUR62004381' => 'cqu', 'AUR62004382' => 'cqu', 'AUR62007331' => 'cqu', 'AUR62010710' => 'cqu', 'AUR62018668' => 'cqu', 'AUR62020091' => 'cqu', 'AUR62022587' => 'cqu', 'AUR62027257' => 'cqu', 'AUR62027258' => 'cqu', 'BcaB01g01639' => 'bca', 'BcaB01g01641' => 'bca', 'BcaB01g01642' => 'bca', 'BcaB03g11996' => 'bca', 'BcaB03g13126' => 'bca', 'BcaB07g30298' => 'bca', 'BcaB07g30299' => 'bca', 'BcaB08g34334' => 'bca', 'BcaC01g01746' => 'bca', 'BcaC02g12157' => 'bca', 'BcaC04g21135' => 'bca', 'BcaC06g31182' => 'bca', 'BcaC06g33997' => 'bca', 'BcaC07g38706' => 'bca', 'BcaC07g41616' => 'bca', 'BcaNung06758' => 'bca', 'BcaNung06936' => 'bca', 'BolC4t21843H' => 'bol', 'BolC4t22314H' => 'bol', 'BolC4t28702H' => 'bol', 'BolC7t43903H' => 'bol', 'BolC8t49260H' => 'bol', 'BolC8t52169H' => 'bol', 'BolC9t56363H' => 'bol', 'BraA04t18885Z' => 'bra', 'BraA05t19563Z' => 'bra', 'BraA06t27201Z' => 'bra', 'BraA07t29069Z' => 'bra', 'BraA08t35145Z' => 'bra', 'BraA09t38346Z' => 'bra', 'BraA09t39495Z' => 'bra', 'BraA09t41628Z' => 'bra', 'C03p72360' => 'bna', 'C04p01930' => 'bna', 'C04p06930' => 'bna', 'C04p12990' => 'bna', 'C04p13040' => 'bna', 'C04p13090' => 'bna', 'C04p72060' => 'bna', 'C07p19420' => 'bna', 'C07p33890' => 'bna', 'C08p16360' => 'bna', 'C08p46200' => 'bna', 'C09p35170' => 'bna', 'CAN.G265.1' => 'can', 'CAN.G338.62' => 'can', 'CAN.G394.103' => 'can', 'CAN.G399.6' => 'can', 'CAN.G479.28' => 'can', 'CAN.G532.4' => 'can', 'CAN.G587.35' => 'can', 'CAN.G78.96' => 'can', 'CANSAT56G3208' => 'cansat', 'CANSAT64G1299' => 'cansat', 'CANSAT80G2117' => 'cansat', 'CARHR014250' => 'chi', 'CARHR025390' => 'chi', 'CARHR141300' => 'chi', 'CARHR145820' => 'chi', 'CARHR255180' => 'chi', 'Carub.0001s1358' => 'cru', 'Carub.0001s2446' => 'cru', 'Carub.0004s2873' => 'cru', 'Carub.0005s0243' => 'cru', 'Carub.0006s3033' => 'cru', 'Ca_05717_v3' => 'car', 'Ca_07609_v3' => 'car', 'Ca_07611_v3' => 'car', 'Ca_07937_v3' => 'car', 'Ca_10935_v3' => 'car', 'Ca_13805_v3' => 'car', 'Ca_23611_v3' => 'car', 'CBR_g38948' => 'cbr', 'Cc01_g13810' => 'ccan', 'Cc02_g38230' => 'ccan', 'Cc04_g15080' => 'ccan', 'Cc06_g01650' => 'ccan', 'Cc08_g14950' => 'ccan', 'Cc11_g12190' => 'ccan', 'CDE04G1743' => 'cde', 'CDE05G1437' => 'cde', 'CDE10G0380' => 'cde', 'CDE10G0764' => 'cde', 'Cfa007642' => 'cfa', 'Cfa008894' => 'cfa', 'Cfa012207' => 'cfa', 'Cfa017254' => 'cfa', 'Cfa019306' => 'cfa', 'Ciclev10011783m.g' => 'ccl', 'Ciclev10011958m.g' => 'ccl', 'Ciclev10019137m.g' => 'ccl', 'Ciclev10019313m.g' => 'ccl', 'Ciclev10019841m.g' => 'ccl', 'Ciclev10031172m.g' => 'ccl', 'CiPaw.01G063400' => 'cil', 'CiPaw.02G032600' => 'cil', 'CiPaw.03G090500' => 'cil', 'CiPaw.05G126600' => 'cil', 'CiPaw.06G091200' => 'cil', 'CiPaw.11G133000' => 'cil', 'CiPaw.12G091700' => 'cil', 'ClCG05G001430' => 'cla', 'ClCG06G003580' => 'cla', 'ClCG06G015780' => 'cla', 'ClCG07G008230' => 'cla', 'COL.COLO4_12732' => 'col', 'COL.COLO4_16589' => 'col', 'COL.COLO4_17212' => 'col', 'COL.COLO4_17214' => 'col', 'COL.COLO4_17216' => 'col', 'COL.COLO4_21393' => 'col', 'COL.COLO4_22217' => 'col', 'COL.COLO4_22968' => 'col', 'COL.COLO4_27911' => 'col', 'COL.COLO4_30909' => 'col', 'COL.COLO4_34492' => 'col', 'Cpa.g.sc1.106' => 'cpa', 'Cpa.g.sc1258.5' => 'cpa', 'Cpa.g.sc14.160' => 'cpa', 'Cpa.g.sc214.10' => 'cpa', 'Cpa.g.sc214.11' => 'cpa', 'Cpa.g.sc94.11' => 'cpa', 'CsaV3_1G002760' => 'csa', 'CsaV3_3G008820' => 'csa', 'CsaV3_4G005870' => 'csa', 'CsaV3_6G000670' => 'csa', 'CSS0003546' => 'camsi', 'CSS0005388' => 'camsi', 'CSS0007000' => 'camsi', 'CSS0012211' => 'camsi', 'CSS0017948' => 'camsi', 'CSS0026255' => 'camsi', 'CSS0026497' => 'camsi', 'CSS0029456' => 'camsi', 'CSS0034988' => 'camsi', 'DCAR_000625' => 'dca', 'DCAR_004621' => 'dca', 'DCAR_005904' => 'dca', 'DCAR_005905' => 'dca', 'DCAR_006935' => 'dca', 'DCAR_006936' => 'dca', 'DCAR_006937' => 'dca', 'DCAR_007186' => 'dca', 'DCAR_008615' => 'dca', 'DCAR_018727' => 'dca', 'DCAR_018728' => 'dca', 'DCAR_018729' => 'dca', 'DCAR_026012' => 'dca', 'DCAR_030032' => 'dca', 'Dinv10691' => 'din', 'Dinv14469' => 'din', 'Dinv14528' => 'din', 'Dinv28588' => 'din', 'Dinv28607' => 'din', 'Dinv32496' => 'din', 'Dinv33818' => 'din', 'Dinv34958' => 'din', 'Dinv35511' => 'din', 'Dinv37083' => 'din', 'Dinv37623' => 'din', 'Dinv38789' => 'din', 'Dinv38926' => 'din', 'Dinv43837' => 'din', 'Duzib068G0113' => 'dzi', 'Duzib068G0607' => 'dzi', 'Duzib084G0858' => 'dzi', 'Duzib138G1265' => 'dzi', 'Duzib187G1361' => 'dzi', 'Duzib205G0646' => 'dzi', 'Duzib248G0823' => 'dzi', 'Duzib251G0729' => 'dzi', 'Duzib264G1025' => 'dzi', 'Duzib268G0149' => 'dzi', 'Duzib268G0458' => 'dzi', 'ECA232G2858' => 'eca', 'ECA233G0791' => 'eca', 'ECA233G4660' => 'eca', 'ECA236G2925' => 'eca', 'ECA240G3418' => 'eca', 'ECA246G1271' => 'eca', 'ECA246G2442' => 'eca', 'ECA246G4060' => 'eca', 'ECA247G0916' => 'eca', 'ECA247G4012' => 'eca', 'ECA248G3286' => 'eca', 'EL10Ac1g00395' => 'bvu', 'EL10Ac2g04061' => 'bvu', 'EL10Ac5g12799' => 'bvu', 'EL10Ac7g16120' => 'bvu', 'Eucgr.B00573' => 'egr', 'Eucgr.D02306' => 'egr', 'Eucgr.E00117' => 'egr', 'Eucgr.K02501' => 'egr', 'FAN01G2141' => 'fan', 'FAN02G3696' => 'fan', 'FAN03G0730' => 'fan', 'FAN04G2600' => 'fan', 'FAN05G0695' => 'fan', 'FAN05G4800' => 'fan', 'FAN06G1348' => 'fan', 'FAN06G3706' => 'fan', 'FAN07G1683' => 'fan', 'FAN08G0383' => 'fan', 'FAN08G0459' => 'fan', 'FAN08G3154' => 'fan', 'FAN09G0534' => 'fan', 'FAN09G0856' => 'fan', 'FAN09G3928' => 'fan', 'FAN10G1151' => 'fan', 'FAN10G2616' => 'fan', 'FAN12G2277' => 'fan', 'FAN13G0309' => 'fan', 'FAN14G0310' => 'fan', 'FAN14G2427' => 'fan', 'FAN14G4629' => 'fan', 'FAN17G0337' => 'fan', 'FAN18G1741' => 'fan', 'FAN18G3384' => 'fan', 'FAN22G0446' => 'fan', 'FvH4_4g30340' => 'fve', 'FvH4_5g02760' => 'fve', 'FvH4_5g02770' => 'fve', 'FvH4_5g02771' => 'fve', 'FvH4_5g02772' => 'fve', 'FvH4_5g14260' => 'fve', 'FvH4_6g12001' => 'fve', 'FvH4_6g16700' => 'fve', 'FvH4_6g47220' => 'fve', 'FvH4_7g14740' => 'fve', 'Glyma.04G164200' => 'gma', 'Glyma.05G209500' => 'gma', 'Glyma.06G201500' => 'gma', 'Glyma.07G069150' => 'gma', 'Glyma.07G145600' => 'gma', 'Glyma.07G226900' => 'gma', 'Glyma.08G016200' => 'gma', 'Glyma.09G257700' => 'gma', 'Glyma.18G234900' => 'gma', 'Glyma.20G026500' => 'gma', 'Gohir.A03G069300' => 'ghi', 'Gohir.A03G103700' => 'ghi', 'Gohir.A05G371300' => 'ghi', 'Gohir.A07G141700' => 'ghi', 'Gohir.A08G183800' => 'ghi', 'Gohir.A11G033000' => 'ghi', 'Gohir.A11G090100' => 'ghi', 'Gohir.A12G108400' => 'ghi', 'Gohir.A13G080900' => 'ghi', 'Gohir.D02G128900' => 'ghi', 'Gohir.D03G095800' => 'ghi', 'Gohir.D04G044400' => 'ghi', 'Gohir.D07G147200' => 'ghi', 'Gohir.D08G197580' => 'ghi', 'Gohir.D08G197620' => 'ghi', 'Gohir.D08G202300' => 'ghi', 'Gohir.D11G036300' => 'ghi', 'Gohir.D11G094600' => 'ghi', 'Gohir.D12G111600' => 'ghi', 'Gohir.D13G080700' => 'ghi', 'Gorai.001G168400' => 'gra', 'Gorai.003G100500' => 'gra', 'Gorai.004G213500' => 'gra', 'Gorai.005G144600' => 'gra', 'Gorai.007G039100' => 'gra', 'Gorai.007G101000' => 'gra', 'Gorai.008G120900' => 'gra', 'Gorai.012G049700' => 'gra', 'Gorai.013G092500' => 'gra', 'GSVIVG01007928001' => 'vvi', 'GSVIVG01011506001' => 'vvi', 'GSVIVG01019386001' => 'vvi', 'GSVIVG01027004001' => 'vvi', 'GSVIVG01034007001' => 'vvi', 'HanXRQChr04g0121231' => 'han', 'HanXRQChr04g0123701' => 'han', 'HanXRQChr05g0157221' => 'han', 'HanXRQChr06g0170201' => 'han', 'HanXRQChr06g0170211' => 'han', 'HanXRQChr08g0211561' => 'han', 'HanXRQChr12g0362981' => 'han', 'HanXRQChr12g0375341' => 'han', 'HanXRQChr13g0394511' => 'han', 'HanXRQChr13g0426641' => 'han', 'HanXRQChr14g0439171' => 'han', 'HanXRQChr15g0492681' => 'han', 'HanXRQChr17g0533521' => 'han', 'Haze_07688' => 'cav', 'Haze_08806' => 'cav', 'Haze_11925' => 'cav', 'Haze_14454' => 'cav', 'Haze_15529' => 'cav', 'Haze_20952' => 'cav', 'Haze_20954' => 'cav', 'Hma1.2p1_0029F.1_g018130' => 'hma', 'Hma1.2p1_0227F.1_g096240' => 'hma', 'Hma1.2p1_0763F.1_g214680' => 'hma', 'Hma1.2p1_1123F.1_g259420' => 'hma', 'HPP92_006057' => 'vpl', 'HPP92_019210' => 'vpl', 'HPP92_019266' => 'vpl', 'HPP92_022589' => 'vpl', 'Hund11455' => 'sun', 'Hund14357' => 'sun', 'Hund16657' => 'sun', 'Hund18862' => 'sun', 'Hund27261' => 'sun', 'Lalb_Chr03g0042181' => 'lal', 'Lalb_Chr05g0220021' => 'lal', 'Lalb_Chr09g0329021' => 'lal', 'Lalb_Chr10g0096831' => 'lal', 'Lalb_Chr12g0197071' => 'lal', 'Lalb_Chr16g0385591' => 'lal', 'Lalb_Chr16g0390141' => 'lal', 'Lalb_Chr17g0339461' => 'lal', 'Lalb_Chr19g0125361' => 'lal', 'Lj1g0008294' => 'lja', 'Lj1g0010644' => 'lja', 'Lj2C182T7' => 'lonja', 'Lj2C182T8' => 'lonja', 'Lj2C80G11' => 'lonja', 'Lj2C80G12' => 'lonja', 'Lj2P1076T6' => 'lonja', 'Lj2P1076T7' => 'lonja', 'Lj3g0022532' => 'lja', 'Lj4g0001914' => 'lja', 'Lj4g0003400' => 'lja', 'Lj4g0007126' => 'lja', 'Lj4g0017790' => 'lja', 'Lj5g0000187' => 'lja', 'Lj7A510G35' => 'lonja', 'Lj9A585G53' => 'lonja', 'Lj9C470G2' => 'lonja', 'Lsat_1_v5_gn_3_137381' => 'lsa', 'Lsat_1_v5_gn_3_56080' => 'lsa', 'Lsat_1_v5_gn_4_110360' => 'lsa', 'Lsat_1_v5_gn_5_170900' => 'lsa', 'Lsat_1_v5_gn_5_21900' => 'lsa', 'Lsat_1_v5_gn_6_5381' => 'lsa', 'Lsat_1_v5_gn_7_4241' => 'lsa', 'Lsat_1_v5_gn_8_47561' => 'lsa', 'Lsat_1_v5_gn_9_25741' => 'lsa', 'Manes.01G029100' => 'mes', 'Manes.01G060100' => 'mes', 'Manes.01G098000' => 'mes', 'Manes.01G255100' => 'mes', 'Manes.02G053300' => 'mes', 'Manes.05G032600' => 'mes', 'Manes.06G087100' => 'mes', 'Mapoly0025s0094' => 'mpo', 'MBI14_g32947_MAGBIO' => 'mbi', 'MBI16_g09912_MAGBIO' => 'mbi', 'MBI17_g33053_MAGBIO' => 'mbi', 'MBI17_g36852_MAGBIO' => 'mbi', 'MBI19_g19848_MAGBIO' => 'mbi', 'MD00G1156000' => 'mdo', 'MD01G1066000' => 'mdo', 'MD04G1147000' => 'mdo', 'MD06G1087600' => 'mdo', 'MD07G1134600' => 'mdo', 'MD09G1062800' => 'mdo', 'MD12G1160300' => 'mdo', 'MD13G1064500' => 'mdo', 'MD14G1108400' => 'mdo', 'MD14G1209100' => 'mdo', 'MD16G1063000' => 'mdo', 'MD17G1056700' => 'mdo', 'Medtr0259s0060' => 'mtr', 'Medtr1g069600' => 'mtr', 'Medtr1g073380' => 'mtr', 'Medtr1g073420' => 'mtr', 'Medtr1g073430' => 'mtr', 'Medtr1g073530' => 'mtr', 'Medtr1g073590' => 'mtr', 'Medtr3g023780' => 'mtr', 'Medtr5g048010' => 'mtr', 'Medtr6g012370' => 'mtr', 'Medtr6g071350' => 'mtr', 'Medtr6g071355' => 'mtr', 'Medtr7g066880' => 'mtr', 'Medtr7g066890' => 'mtr', 'Medtr7g066920' => 'mtr', 'Medtr7g066970' => 'mtr', 'Medtr7g067580' => 'mtr', 'Medtr7g078120' => 'mtr', 'Medtr8g028905' => 'mtr', 'Medtr8g098605' => 'mtr', 'Medtr8g098635' => 'mtr', 'Medtr8g098645' => 'mtr', 'Medtr8g098655' => 'mtr', 'Medtr8g098880' => 'mtr', 'MELO3C006099.2' => 'cme', 'MELO3C016363.2' => 'cme', 'MELO3C017211.2' => 'cme', 'MELO3C021200.2' => 'cme', 'Migut.B01773' => 'egut', 'Migut.E00054' => 'egut', 'Migut.E01076' => 'egut', 'Migut.J00223' => 'egut', 'Migut.L01204' => 'egut', 'Migut.N00820' => 'egut', 'MSTRG.13444' => 'ama', 'MSTRG.13849' => 'ama', 'MSTRG.17282' => 'ama', 'MSTRG.5597' => 'ama', 'MSTRG.743' => 'ama', 'MSTRG.7753' => 'ama', 'Nitab4.5_0000008g0790' => 'nta', 'Nitab4.5_0000386g0010' => 'nta', 'Nitab4.5_0000583g0230' => 'nta', 'Nitab4.5_0000744g0190' => 'nta', 'Nitab4.5_0001522g0090' => 'nta', 'Nitab4.5_0001702g0140' => 'nta', 'Nitab4.5_0001837g0020' => 'nta', 'Nitab4.5_0001961g0020' => 'nta', 'Nitab4.5_0002811g0050' => 'nta', 'Nitab4.5_0002881g0090' => 'nta', 'Nitab4.5_0003779g0070' => 'nta', 'Nitab4.5_0004114g0010' => 'nta', 'Nitab4.5_0004511g0010' => 'nta', 'Nitab4.5_0005160g0040' => 'nta', 'Nitab4.5_0006018g0020' => 'nta', 'Nitab4.5_0006673g0050' => 'nta', 'Nitab4.5_0010287g0010' => 'nta', 'Nitab4.5_0026162g0010' => 'nta', 'Nn1g01577' => 'nnu', 'Nn2g11371' => 'nnu', 'Nn2g13607' => 'nnu', 'Nn3g17402' => 'nnu', 'Nn4g23379' => 'nnu', 'Nn6g33357' => 'nnu', 'Oeu004570.2' => 'oeu', 'Oeu004616.2' => 'oeu', 'Oeu008274.1' => 'oeu', 'Oeu013786.1' => 'oeu', 'Oeu016221.1' => 'oeu', 'Oeu019182.1' => 'oeu', 'Oeu027143.1' => 'oeu', 'Oeu040795.1' => 'oeu', 'Oeu040796.1' => 'oeu', 'Oeu042334.1' => 'oeu', 'Oeu052959.2' => 'oeu', 'Os01g0852500' => 'osa', 'Os03g0425800' => 'osa', 'Os04g0166400' => 'osa', 'Os10g0446400' => 'osa', 'Peaxi162Scf00008g02527' => 'pax', 'Peaxi162Scf00013g00510' => 'pax', 'Peaxi162Scf00020g00813' => 'pax', 'Peaxi162Scf00074g02029' => 'pax', 'Peaxi162Scf00106g00092' => 'pax', 'Peaxi162Scf00141g00719' => 'pax', 'Peaxi162Scf00191g01433' => 'pax', 'Peaxi162Scf00201g00011' => 'pax', 'Peaxi162Scf01058g00013' => 'pax', 'PGR031G2945' => 'pgr', 'PGR042G3278' => 'pgr', 'PGR044G1914' => 'pgr', 'PGR119G0619' => 'pgr', 'PGSC0003DMG400000178' => 'stu', 'PGSC0003DMG400019394' => 'stu', 'PGSC0003DMG400020320' => 'stu', 'PGSC0003DMG400021657' => 'stu', 'PGSC0003DMG400030435' => 'stu', 'PGSC0003DMG400030436' => 'stu', 'PGSC0003DMG400030437' => 'stu', 'PGSC0003DMG400033089' => 'stu', 'PGSC0003DMG401012197' => 'stu', 'PGSC0003DMG401024549' => 'stu', 'PGSC0003DMG402012197' => 'stu', 'PGSC0003DMG402024549' => 'stu', 'Phvul.002G168600' => 'pvu', 'Phvul.002G291300' => 'pvu', 'Phvul.008G060800' => 'pvu', 'Phvul.008G107600' => 'pvu', 'Phvul.009G193800' => 'pvu', 'Phvul.010G100300' => 'pvu', 'Potri.001G101800' => 'ptr', 'Potri.002G161100' => 'ptr', 'Potri.003G129800' => 'ptr', 'Potri.004G118400' => 'ptr', 'Potri.008G094400' => 'ptr', 'Potri.010G159700' => 'ptr', 'Potri.014G086700' => 'ptr', 'Potri.017G091900' => 'ptr', 'Pp3c18_4220' => 'ppa', 'Pp3c21_19630' => 'ppa', 'Prupe.1G283800' => 'ppe', 'Prupe.2G173100' => 'ppe', 'Prupe.3G257400' => 'ppe', 'Prupe.5G103500' => 'ppe', 'Prupe.5G201500' => 'ppe', 'Prupe.6G270800' => 'ppe', 'Psat0s2251g0080' => 'psa', 'Psat3g107520' => 'psa', 'Psat3g131360' => 'psa', 'Psat4g212800' => 'psa', 'Psat5g211920' => 'psa', 'Psat6g094440' => 'psa', 'Psat6g094480' => 'psa', 'Psat7g030800' => 'psa', 'Psat7g031720' => 'psa', 'PSO013G0016' => 'pso', 'PSO017G7176' => 'pso', 'PSO063G0169' => 'pso', 'PSO210G0162' => 'pso', 'PSO210G3142' => 'pso', 'PSO210G5839' => 'pso', 'PSO210G7163' => 'pso', 'PSO339G1170' => 'pso', 'PSO384G3317' => 'pso', 'PSO398G0013' => 'pso', 'PSO478G1482' => 'pso', 'PSO478G3420' => 'pso', 'PSO566G0033' => 'pso', 'PSO782G2181' => 'pso', 'QL02p039224' => 'qlo', 'QL03p071232' => 'qlo', 'QL04p054019' => 'qlo', 'QL10p018760' => 'qlo', 'QL12p032501' => 'qlo', 'QL93p0191_0009' => 'qlo', 'RcHm_v2.0_Chr1g0356691' => 'rch', 'RcHm_v2.0_Chr2g0166271' => 'rch', 'RcHm_v2.0_Chr3g0456051' => 'rch', 'RcHm_v2.0_Chr3g0463841' => 'rch', 'RcHm_v2.0_Chr3g0470651' => 'rch', 'RcHm_v2.0_Chr4g0438631' => 'rch', 'RcHm_v2.0_Chr7g0182651' => 'rch', 'RcHm_v2.0_Chr7g0197161' => 'rch', 'Rhsim02G0233300' => 'rsi', 'Rhsim04G0166100' => 'rsi', 'Rhsim07G0013300' => 'rsi', 'Rhsim08G0074400' => 'rsi', 'Rhsim08G0148300' => 'rsi', 'Rhsim12G0135000' => 'rsi', 'Rhsim13G0073100' => 'rsi', 'RhsimUnG0160200' => 'rsi', 'Sabra01G0076800' => 'sbr', 'Sabra02G0128100' => 'sbr', 'Sabra03G0092300' => 'sbr', 'Sabra04G0068400' => 'sbr', 'Sabra08G0070900' => 'sbr', 'Sabra10G0121400' => 'sbr', 'Sabra14G0062900' => 'sbr', 'Sabra17G0080900' => 'sbr', 'SalBow1G2326' => 'sbo', 'SalBow2G1303' => 'sbo', 'SalBow2G2005' => 'sbo', 'SalBow3G0125' => 'sbo', 'SalBow5G1897' => 'sbo', 'SalBow5G5262' => 'sbo', 'SalBow8G2075' => 'sbo', 'Sc04g0003110' => 'sci', 'Sc10g0009780' => 'sci', 'Sc21g0006200' => 'sci', 'Sc22g0005520' => 'sci', 'Sc26g0000860' => 'sci', 'Sed0006130' => 'sed', 'Sed0006642' => 'sed', 'Sed0007350' => 'sed', 'Sed0009983' => 'sed', 'Sed0026050' => 'sed', 'SEGI_00079' => 'sgi', 'SEGI_03958' => 'sgi', 'SEGI_35033' => 'sgi', 'SGA_v2.0_scaffold144G35910' => 'sas', 'SGA_v2.0_scaffold146G36136' => 'sas', 'SGA_v2.0_scaffold287G47162' => 'sas', 'SGA_v2.0_scaffold4G02295' => 'sas', 'SGA_v2.0_scaffold63G21633' => 'sas', 'SGA_v2.0_scaffold85G26762' => 'sas', 'SHI13424' => 'shi', 'SHI27020' => 'shi', 'SMO298G0013' => 'smo', 'SMO358G0195' => 'smo', 'SMO358G0300' => 'smo', 'SMO358G0672' => 'smo', 'SMO367G0320' => 'smo', 'Solyc01g094820.3' => 'sly', 'Solyc03g115430.2' => 'sly', 'Solyc03g115440.3' => 'sly', 'Solyc05g049960.4' => 'sly', 'Solyc06g069560.3' => 'sly', 'Solyc06g076710.3' => 'sly', 'Solyc06g076740.3' => 'sly', 'Solyc08g081290.4' => 'sly', 'Solyc09g014170.3' => 'sly', 'Solyc10g012210.3' => 'sly', 'Sopen01g038590' => 'spe', 'Sopen03g034440' => 'spe', 'Sopen05g028320' => 'spe', 'Sopen06g026850' => 'spe', 'Sopen06g033100' => 'spe', 'Sopen06g033110' => 'spe', 'Sopen06g033120' => 'spe', 'Sopen08g029600' => 'spe', 'Sopen09g007050' => 'spe', 'Sopen10g005980' => 'spe', 'Sp1g12080' => 'spa', 'Sp2g14380' => 'spa', 'Sp4g28100' => 'spa', 'Sp6g06060' => 'spa', 'TAR623G1374' => 'tar', 'TAR629G1697' => 'tar', 'TAR633G0182' => 'tar', 'TAR636G0722' => 'tar', 'THA.LOC104805188' => 'tha', 'THA.LOC104805503' => 'tha', 'THA.LOC104814640' => 'tha', 'THA.LOC104822020' => 'tha', 'THA.LOC104824064' => 'tha', 'THA.LOC104824514' => 'tha', 'Thecc.01G357000' => 'tca', 'Thecc.02G333900' => 'tca', 'Thecc.03G097600' => 'tca', 'Thecc.03G281700' => 'tca', 'Thecc.04G092400' => 'tca', 'Thhalv10001382m.g' => 'esa', 'Thhalv10002072m.g' => 'esa', 'Thhalv10002074m.g' => 'esa', 'Thhalv10002302m.g' => 'esa', 'Thhalv10005386m.g' => 'esa', 'Thhalv10008408m.g' => 'esa', 'Thhalv10009562m.g' => 'esa', 'Thhalv10028531m.g' => 'esa', 'Thhalv10029341m.g' => 'esa', 'Thhalv10029421m.g' => 'esa', 'TPR.G12172' => 'tpr', 'TPR.G12772' => 'tpr', 'TPR.G12829' => 'tpr', 'TPR.G12943' => 'tpr', 'TPR.G1568' => 'tpr', 'TPR.G1571' => 'tpr', 'TPR.G1578' => 'tpr', 'TPR.G1589' => 'tpr', 'TPR.G17906' => 'tpr', 'TPR.G21801' => 'tpr', 'TPR.G33041' => 'tpr', 'TPR.G37739' => 'tpr', 'TWI32G0558' => 'twi', 'TWI32G0617' => 'twi', 'TWI34G0081' => 'twi', 'TWI59G0423' => 'twi', 'TWI60G0673' => 'twi', 'TWI74G0022' => 'twi', 'TWI79G1532' => 'twi', 'unitig_22.g6897' => 'ugi', 'unitig_26.g9301' => 'ugi', 'unitig_27.g24822' => 'ugi', 'unitig_62.g23695' => 'ugi', 'unitig_749.g14348' => 'ugi', 'unitig_8.g3965' => 'ugi', 'vmacro02994' => 'vma', 'vmacro06937' => 'vma', 'vmacro13262' => 'vma', 'vmacro16366' => 'vma', 'vmacro20920' => 'vma', 'vmacro20921' => 'vma', 'VMungo0251G2594' => 'vmu', 'VMungo0251G3712' => 'vmu', 'VMungo0331G0277' => 'vmu', 'VMungo0331G1103' => 'vmu', 'VMungo1309G2098' => 'vmu', 'VMungo1383G0179' => 'vmu', 'VMungo1383G0617' => 'vmu', 'VMungo1383G3198' => 'vmu', 'Zm00001eb008480' => 'zma', 'Zm00001eb020280' => 'zma', 'Zm00001eb047000' => 'zma', 'Zm00001eb063150' => 'zma', 'Zm00001eb211430' => 'zma', 'Zm00001eb367410' => 'zma', 'Zm00001eb400350' => 'zma', 'Zm00001eb418330' => 'zma' ) $gf_id = 'HOM05D000773' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000773' ) $data_identifier = 'HOM05D000773' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 16, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 14, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 24, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 12, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418330' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1